Accounting and invoicing for Shopify stores
Orders by the minute, discount codes, returns, payouts from payment providers and ad costs: a Shopify store has many data sources and little time for paperwork. Saldiqo fetches orders from Shopify, writes invoice and delivery note, records payouts and shows what is left after fees and advertising.
What comes up for Shopify stores
Many orders
Every order needs an invoice, a delivery note and a payment received.
Payouts and fees
Payment providers pay out in bundles and deduct fees.
Ad costs
Ads are the biggest expense of many stores. Invoices come from several platforms.
How Saldiqo helps
- Connect ShopifyEnter the access details, fetch orders.
- Match payoutsUpload the bank statement.
- Record ad costsPlatform invoices as expenses.
- ReturnsCredit note with a link.
Typical invoice lines
Examples that often appear on invoices in this industry. You set the prices yourself.
- Items as per order
- Shipping as per order
- Discount code, deducted
- Credit note: return
- Payment provider fee as per statement
- Ad costs as per receipt
Tax and invoicing in Cyprus
What applies to invoices in Cyprus, in short. As of October 2026.
- VAT
- Rates 19 %, 9 %, 5 % and 3 %, plus 0 % until 31 December 2026 for infant milk, nappies, hygiene products and fresh fruit and vegetables.
- VAT registration
- The threshold is €15,600 of taxable turnover over 12 months, or expected within the next 30 days. If you sell services to businesses in other EU countries, you generally register from the first sale. Until you are registered, Saldiqo leaves VAT off and adds up your turnover.
- What goes on an invoice
- Even businesses that are not VAT registered must issue invoices and receipts. Companies show their name, HE number, the words “private company” where they apply, and their registered office. Notes such as reverse charge appear in Greek and English.
- Invoice timing
- Issue invoices within 30 days.
- E-invoicing
- There is no mandate. Public bodies accept e-invoices (Peppol BIS 3.0) and suppliers send them voluntarily. EU rules follow from 1 July 2030.
- VAT returns
- VAT4 returns are filed online through TFA, quarterly with staggered periods, by the 10th of the second month after the period, moved to the next working day if it falls on a weekend. Saldiqo does not file returns.
- Record keeping
- Plan for 10 years. The minimum is 6 years, VAT records can need up to 7 years, and OSS records 10 years.
- Late payment
- Interest on late business payments is 10.40 %, plus €40 compensation between businesses.
- Languages
- Use Saldiqo in Greek or English and send invoices in either language.
Frequently asked questions
How do I connect Shopify?
You enter your shop address and the access token of your own app. Saldiqo reads orders and reports shipping back if you like.
How do I treat payouts?
You upload the bank statement, match receipts to orders and record fees as an expense.
Do Shopify stores in Cyprus have to charge VAT?
Once they are registered, yes. The threshold is €15,600 over 12 months, or expected within 30 days. Services to businesses in other EU countries require registration from the first sale.
Do Shopify stores in Cyprus need e-invoicing?
No. Public bodies accept e-invoices through Peppol and suppliers use it voluntarily. EU rules follow from July 2030, so PDF invoices remain fine today.
How long should Shopify stores keep invoices?
Plan for 10 years: the minimum is 6 years, VAT records can need up to 7 and OSS records 10. You can store receipts digitally in Saldiqo. The legal duty to keep records stays with you.
Try Saldiqo for free
Write invoices, match payments, collect receipts and send reminders: free and without a trial period.
Start for freeThis page for other countries
Related niches
More industries
As of October 2026. General information, not legal or tax advice, without guarantee. For your case ask your tax adviser.